ByoTrack

Install

  • Installation

Getting started

  • ByoTrack fundamental features
  • Video
  • Detectors
  • Linkers

API

  • Video
  • Detections
  • Tracks
  • Tracker
  • Detector
  • Linker
  • Refiner
  • Optical Flow
  • Parameters

API implementations

  • Detectors
    • Multi scale wavelet thresholding
    • StarDist
  • Linkers
  • Refiners
  • Optical Flows

Datasets

  • Cell Tracking Challenge (CTC)
  • SINETRA

Metrics

  • Cell Tracking Challenge (CTC)

Icy support

  • Icy

Fiji support

  • Fiji

Visualization

  • ByoTrack ViZ
ByoTrack
  • Detectors
  • View page source

Detectors

  • Multi scale wavelet thresholding
    • B3SplineUWT
      • B3SplineUWT.forward()
    • B3SplineUWTApprox1
      • B3SplineUWTApprox1.forward()
    • B3SplineUWTApprox2
      • B3SplineUWTApprox2.forward()
    • filter_small_objects()
    • WaveletDetector
      • WaveletDetector.scale
      • WaveletDetector.k
      • WaveletDetector.min_area
      • WaveletDetector.device
      • WaveletDetector.b3swt
      • WaveletDetector.detect()
      • WaveletDetector.compute_threshold()
      • WaveletDetector.optimize()
  • StarDist
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© Copyright 2023, Raphael Reme.

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